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Best Assembly Dictyota dichotoma (Male)

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Dictyota
  • Species: dichotoma
  • Strain: ODC1387m
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore, Hi-C
  • Size: 854.22 Mbp
  • Number of contigs: 1467
  • GC content: 50.2%
  • N content: 0.35%
  • N50: 26.43 Mbp
  • L50: 13

Annotation

  • Protein-coding genes: 20583
  • Gene length (average): 14498.52
  • Gene length (median): 5950.0
  • CDS length (average): 1190.84
  • CDS length (median): 741.0
  • CDS proportion (genome): 2.9%
  • Genes without introns: 5188
  • Number of contigs with at least one gene (genome): 73.3%
  • Number of contigs with at least one gene (bases): 91.6%

BUSCO results (BUSCO v3 with eukaryota_odb9 set)

Genome

  • Single-copy genes: 199
  • Duplicated genes: 2
  • Fragmented genes: 24
  • Missing genes: 30

Proteins

  • Single-copy genes: 203
  • Duplicated genes: 3
  • Fragmented genes: 17
  • Missing genes: 32

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >