Phaeoexplorer: downloads

Data collected in the Phaeoexplorer project is available for download.

The following archives contain the data from all strains for the different organisms:

Download all genomes: all_FINAL_GENOME_ASSEMBLIES.tar.gz
Download all GFFs: all_FINAL_ANNOTATIONS.tar.gz
Download all proteomes: all_FINAL_PROTEOMES.tar.gz
Download all transcriptomes: all_FINAL_TRANSCRIPTOMES.tar.gz
Download all CDS: all_FINAL_CDS.tar.gz
Download all contaminants assemblies: all_FINAL_CONTAMINANTS_ASSEMBLIES.tar.gz
Download all de novo transcriptomes: all_DENOVO_TRANSCRIPTOMES.tar.gz
Download all Orthofinder results: all_ORTHOFINDER.tar.gz
Download all InterProScan results: all_InterProScan.tar.gz
Download all Hectar results: all_Hectar.tar.gz
Download all Blast vs uniref90 results: all_BLAST-vs-uniref90.tar.gz
Download all eggNOG results: all_eggNOG.tar.gz
Download all mRNA expression data: all_mRNAexpression.tar.gz
Download all organelle genomes: all_organelle_genomes.tar.gz

Click on an archive below to download all the data produced for the associated species.

Hover over icons to view corresponding captions ( )

Species	Archive
Agarum clathratum Sequencing: Illumina	Not available
Alaria esculenta Sequencing:	Not available
Alaria marginata Sequencing: Illumina	Not available
Alethocladus corymbosus Sequencing: Illumina	Not available
Ascophyllum nodosum Sequencing: Illumina, Nanopore Good quality assembly	Ascophyllum-nodosum.tar.gz
Ascoseira mirabilis Sequencing: Illumina	Not available
Bodanella lauterbornii Sequencing: Illumina	Not available
Botrytella micromora Sequencing: Illumina	Not available
Botrytella uvaeformis Sequencing: Illumina	Not available
Canistrocarpus cervicornis Sequencing: Illumina	Not available
Carpomitra costata Sequencing: Illumina	Not available
Chlorellidium tetrabotrys Sequencing: Illumina	Not available
Chordaria linearis Sequencing: Illumina, Nanopore Near chromosome scale assembly	Chordaria-linearis.tar.gz
Choristocarpus tenellus Sequencing: Illumina, Nanopore Draft genome	Choristocarpus-tenellus.tar.gz
Chrysoparadoxa australica Sequencing: Illumina Draft genome	Chrysoparadoxa-australica.tar.gz
Cladosiphon okamuranus Sequencing: Illumina MatePE	PUBLIC_Cladosiphon-okamuranus.tar.gz
Costaria costata Sequencing: Illumina	Not available
Cymathaere triplicata Sequencing: Illumina	Not available
Desmarestia aculeata Sequencing: Illumina	Not available
Desmarestia anceps Sequencing: Illumina	Not available
Desmarestia dudresnayi Sequencing:	Desmarestia-dudresnayi.tar.gz
Desmarestia dudresnayi Sequencing: Illumina Draft genome	Desmarestia-dudresnayi.tar.gz
Desmarestia herbacea Sequencing: Illumina, Nanopore Good quality assembly	Desmarestia-herbacea.tar.gz
Desmarestia herbacea Sequencing:	Desmarestia-herbacea.tar.gz
Dictyota dichotoma Sequencing: Illumina, Nanopore Good quality assembly	Dictyota-dichotoma.tar.gz
Dictyota dichotoma Sequencing: Illumina, Nanopore, Hi-C	Dictyota-dichotoma.tar.gz
Dictyota falklandica Sequencing: Illumina	Not available
Discosporangium mesarthrocarpum Sequencing: Illumina Draft genome	Discosporangium-mesarthrocarpum.tar.gz
Ectocarpoides piscinalis Sequencing: Illumina	Not available
Ectocarpus crouaniorum Sequencing: Illumina, Nanopore, Hi-C	Ectocarpus-crouaniorum-2c.tar.gz
Ectocarpus crouaniorum Sequencing: Illumina, Nanopore Near chromosome scale assembly	Ectocarpus-crouaniorum-2c.tar.gz
Ectocarpus fasciculatus Sequencing: Illumina, Nanopore Good quality assembly	Ectocarpus-fasciculatus.tar.gz
Ectocarpus siliculosus Sequencing: Illumina, Nanopore Good quality assembly	Ectocarpus-siliculosus-1a.tar.gz
Ectocarpus sp. Sequencing: Illumina	Not available
Ectocarpus species1 Sequencing: Illumina Draft genome	Ectocarpus-sp1.tar.gz
Ectocarpus species12 Sequencing: Illumina Draft genome	Ectocarpus-sp12.tar.gz
Ectocarpus species13 Sequencing: Illumina Draft genome	Ectocarpus-sp13.tar.gz
Ectocarpus species2 Sequencing: Illumina Draft genome	Ectocarpus-sp2.tar.gz
Ectocarpus species3 Sequencing: Illumina Draft genome	Ectocarpus-sp3.tar.gz
Ectocarpus species5 Sequencing: Illumina Draft genome	Ectocarpus-sp5.tar.gz
Ectocarpus species6 Sequencing: Illumina, Nanopore Good quality assembly	Ectocarpus-sp6.tar.gz
Ectocarpus species7 Sequencing: Sanger Near chromosome scale assembly	PUBLIC_Ectocarpus-sp7.tar.gz
Ectocarpus species8 Sequencing: Illumina Draft genome	Ectocarpus-sp8.tar.gz
Ectocarpus species9 Sequencing: Illumina Draft genome	Ectocarpus-sp9.tar.gz
Ectocarpus subulatus Sequencing: Illumina MatePE Good quality assembly	PUBLIC_Ectocarpus-subulatus.tar.gz
Ectocarpus subulatus Sequencing: Illumina MatePE, Hi-C	Not available
Egregia menziesii Sequencing: Illumina	Not available
Elachista antarctica Sequencing: Illumina	Not available
Feldmannia mitchelliae Sequencing: Illumina Draft genome	Feldmannia-mitchelliae.tar.gz
Fucus distichus Sequencing: Illumina Draft genome	Fucus-distichus.tar.gz
Fucus serratus Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes Near chromosome scale assembly	Fucus-serratus.tar.gz
Fucus serratus Sequencing: Illumina, Nanopore Good quality assembly	Fucus-serratus.tar.gz
Halopteris paniculata Sequencing: Illumina Draft genome	Halopteris-paniculata.tar.gz
Hapterophycus canaliculatus Sequencing: Illumina Draft genome	Hapterophycus-canaliculatus.tar.gz
Heribaudiella fluviatilis Sequencing: Illumina Draft genome	Heribaudiella-fluviatilis.tar.gz
Heterosigma akashiwo Sequencing: Illumina, Nanopore Good quality assembly	Heterosigma-akashiwo.tar.gz
Himanthalia elongata Sequencing: Illumina Draft genome	Himanthalia-elongata.tar.gz
Himantothallus grandifolius Sequencing: Illumina	Not available
Hincksia hincksiae Sequencing: Illumina	Not available
Hincksia sandriana Sequencing: Illumina	Not available
Internoretia fryeana Sequencing: Illumina	Not available
Laminaria digitata Sequencing: Illumina, Nanopore Draft genome	Laminaria-digitata.tar.gz
Laminaria digitata Sequencing: Illumina	Not available
Laminaria ephemera Sequencing: Illumina	Not available
Laminaria setchellii Sequencing: Illumina	Not available
Laminaria sinclairii Sequencing: Illumina	Not available
Laminariocolax aecidioides Sequencing: Illumina	Not available
Laminarionema elsbetiae Sequencing: Illumina	Not available
Laminarionema elsbetiae Sequencing: Illumina Draft genome	Laminarionema-elsbetiae.tar.gz
Macrocystis pyrifera Sequencing: Near chromosome scale assembly	Not available
Macrocystis pyrifera Sequencing: Illumina	Not available
Microspongium alariae Sequencing: Illumina	Not available
Microzonia velutina Sequencing: Illumina	Not available
Myriogloea chilensis Sequencing: Illumina	Not available
Myriotrichia clavaeformis Sequencing: Illumina Draft genome	Myriotrichia-clavaeformis.tar.gz
Neoagarum fimbriatum Sequencing: Illumina	Not available
Nereocystis luetkeana Sequencing: PacBio Near chromosome scale assembly	Not available
Padina boergesenii Sequencing: Illumina	Not available
Pelvetia canaliculata Sequencing: Illumina Draft genome	Pelvetia-canaliculata.tar.gz
Petalonia sp. Sequencing: Illumina	Not available
Phaeosaccion multiseriatum Sequencing: Illumina, Nanopore, Hi-C Near chromosome scale assembly	Not available
Phaeothamnion wetherbeei Sequencing: Illumina, Nanopore Draft genome	Phaeothamnion-wetherbeei.tar.gz
Pleurocladia lacustris Sequencing: Illumina, Nanopore Good quality assembly	Pleurocladia-lacustris.tar.gz
Polycladia myrica Sequencing: Illumina	Not available
Porterinema fluviatile Sequencing: Illumina, Nanopore Near chromosome scale assembly	Porterinema-fluviatile.tar.gz
Pterygophora californica Sequencing: Illumina	Not available
Pylaiella littoralis Sequencing: Illumina	Not available
Pylaiella littoralis Sequencing: Illumina, Nanopore Good quality assembly	Pylaiella-littoralis.tar.gz
Saccharina japonica Sequencing: Illumina MatePE, PacBio Near chromosome scale assembly	PUBLIC_Saccharina-japonica.tar.gz
Saccharina latissima Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes Near chromosome scale assembly	Saccharina-latissima-v2.tar.gz
Saccharina latissima Sequencing: Illumina	Not available
Saccharina sessilis Sequencing: Illumina	Not available
Saccorhiza dermatodea Sequencing: Illumina Draft genome	Saccorhiza-dermatodea.tar.gz
Saccorhiza polyschides Sequencing: Illumina Draft genome	Saccorhiza-polyschides.tar.gz
Sargassum angustifolium Sequencing: Illumina	Not available
Sargassum fusiforme Sequencing: Illumina PE, PacBio	PUBLIC_Sargassum-fusiforme.tar.gz
Sargassum fusiforme Sequencing: Good quality assembly	PUBLIC_Sargassum-fusiforme.tar.gz
Sargassum latifolium Sequencing: Illumina	Not available
Sargassum thunbergii Sequencing: Good quality assembly	PUBLIC_Sargassum-fusiforme.tar.gz
Schizocladia ischiensis Sequencing: Illumina, Nanopore Near chromosome scale assembly	Schizocladia-ischiensis.tar.gz
Scytosiphon promiscuus Sequencing: Illumina, Nanopore Near chromosome scale assembly	Scytosiphon-promiscuus.tar.gz
Scytosiphon promiscuus Sequencing: Illumina, Nanopore, Hi-C	Scytosiphon-promiscuus.tar.gz
Scytosiphon promiscuus Sequencing: Illumina	Not available
Scytothamnus fasciculatus Sequencing: Illumina	Not available
Sphacelaria divaricata Sequencing: Illumina	Not available
Sphacelaria rigidula Sequencing: Illumina Draft genome	Sphacelaria-rigidula.tar.gz
Sphacelaria rigidula Sequencing: Illumina	Not available
Sphacelaria sp. Sequencing: Illumina	Not available
Sphaerotrichia firma Sequencing: Illumina Draft genome	Sphaerotrichia-firma.tar.gz
Stictyosiphon soriferus Sequencing: Illumina	Not available
Stictyosiphon tortilis Sequencing: Illumina	Not available
Tribonema minus Sequencing: PacBio + illumina Good quality assembly	PUBLIC_Tribonema-minus.tar.gz
Undaria pinnatifida Sequencing: Illumina, PacBio, genetic-map-based pseudochromosomes Near chromosome scale assembly	PUBLIC_Undaria-pinnatifida.tar.gz
Vaucheria bursata Sequencing: Illumina	Not available