The Phaeoexplorer brown algal genome database
A comprehensive database of genome assemblies for brown algae (Phaeophyceae) and closely related stramenopile taxa.
Taxonomy-based search and genome database statistics
Featured Genomes
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Brown algal genome data
Note that the resources available for each genome vary, depending on the quality of the genome assembly.
Genome quality scale:
= Near chromosome scale assembly
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☆ = Good quality assembly
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☆☆ = Draft genome
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☆☆☆ = No quality assessment
| Species | Order | Family | Project | Accession | Genome assembly quality | Sequencing method | Best assembly for the species | WoRMS link | GoaT link | GBIF taxonKey |
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Laminariales | Agaraceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 157207 | 105404 | 2661536 | |
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Laminariales | Alariaceae | Bringloe et al., 2022 Molecular Ecology | PRJNA675898 | Undetermined | True | 145716 | 2889 | 5422592 | |
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Sphacelariales | Stypocaulaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | Not available | 116063 | 3200777 | |
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Fucales | Fucaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 145541 | 52969 | 3196524 | |
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Ascoseirales | Ascoseiraceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 325432 | 76830 | Not available | |
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Sphacelariales | Lithodermataceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | Not available | 246119 | Not available | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145484 | 86904 | 3198845 | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 500194 | Not available | 3198851 | |
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Dictyotales | Dictyotaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 377141 | 499615 | 4377177 | |
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Sporochnales | Sporochnaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145910 | 66794 | 3196229 | |
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Ectocarpales | Chordariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 325486 | 64904 | Not available | |
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Discosporangiales | Choristocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 145887 | 116065 | 3198071 | |
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Chrysoparadoxales | Chrysoparadoxaceae | Wetherbee et al., 2018 Journal of Phycology | PRJEB76691 | Illumina | True | 1359032 | 2498842 | 10092953 | |
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Ectocarpales | Chordariaceae | Nishitsuji et al 2016 DNA Research, Nishitsuji et al 2020 BMC Genomics | PRJDB9346 | Illumina MatePE | True | 371901 | 309737 | 3198562 | |
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Desmarestiales | Desmarestiaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145307 | 62298 | 5423373 | |
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Desmarestiales | Desmarestiaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 325496 | 62299 | Not available | |
| Desmarestia dudresnayi Monoicous v2 | Desmarestiales | Desmarestiaceae | Barrera-Redondo et al., 2025 Nature Ecology & Evolution | PRJNA1059008 | Undetermined | False | 295864 | 99931 | 5730473 | |
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Desmarestiales | Desmarestiaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 295864 | 99931 | 5730473 | |
| Desmarestia herbacea Male v2 | Desmarestiales | Desmarestiaceae | Barrera-Redondo et al., 2025 Nature Ecology & Evolution | PRJNA1059008 | Undetermined | False | 239201 | 1205903 | 5423326 | |
| Desmarestia herbacea Female | Desmarestiales | Desmarestiaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | False | 239201 | 1205903 | 5423326 | |
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Desmarestiales | Desmarestiaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 239201 | 1205903 | 5423326 | |
| Dictyota dichotoma Male | Dictyotales | Dictyotaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | False | 145367 | 2876 | 5423480 | |
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Dictyotales | Dictyotaceae | Barrera-Redondo et al., 2025 Nature Ecology & Evolution | PRJNA1059008 | Illumina, Nanopore, Hi-C | True | 145367 | 2876 | 5423480 | |
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Dictyotales | Dictyotaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 1804479 | 2607331 | Not available | |
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Discosporangiales | Discosporangiaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 145886 | 376270 | 3198076 | |
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Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | Not available | 2873786 | Not available | |||
| Ectocarpus crouaniorum Female | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 496828 | 690460 | 3199545 | |
| Ectocarpus crouaniorum Male | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | False | 496828 | 690460 | 3199545 | |
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Ectocarpales | Ectocarpaceae | Barrera-Redondo et al., 2025 Nature Ecology & Evolution | PRJNA1059008 | Illumina, Nanopore, Hi-C | True | 496828 | 690460 | 3199545 | |
| Ectocarpus fasciculatus Female | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 145404 | 43935 | 3199608 | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 145404 | 43935 | 3199608 | |
| Ectocarpus fasciculatus | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | Not available | 43935 | 3199608 | |
| Ectocarpus fasciculatus | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | Not available | 43935 | 3199608 | |
| Ectocarpus siliculosus Female | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 145410 | 2880 | 3199521 | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 145410 | 2880 | 3199521 | |
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Ectocarpales | Ectocarpaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | Not available | Not available | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1535357 | Not available | |
| Ectocarpus species1 Male | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | Not available | 1535360 | Not available | |
| Ectocarpus species1 Female | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | Not available | 1535357 | Not available | |
| Ectocarpus species12 Female | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | Not available | 1535356 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1535356 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1904779 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1535358 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1535359 | Not available | |
| Ectocarpus species3 Male | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | Not available | 1535359 | Not available | |
| Ectocarpus species5 Male | Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | Not available | 1535361 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1535361 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | Not available | 1535362 | Not available | |
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Ectocarpales | Ectocarpaceae | Cock et al., 2010 Nature, Cormier et al., 2016 New Phytologist | PRJEB76691 | Sanger | True | Not available | 74372 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1535364 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 1535365 | Not available | |
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Ectocarpales | Ectocarpaceae | Barrera-Redondo et al., 2025 Nature Ecology & Evolution | PRJNA1059008 | Illumina MatePE, Hi-C | True | 502074 | 1535423 | 3199537 | |
| Ectocarpus subulatus Male | Ectocarpales | Ectocarpaceae | Dittami et al., 2020 Marine Genomics | PRJEB76691 | Illumina MatePE | False | 502074 | 1535423 | 3199537 | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 325500 | 190703 | Not available | |
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Ectocarpales | Acinetosporaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 699648 | 1964287 | 7907318 | |
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Fucales | Fucaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 145544 | 3012 | 3196454 | |
| Fucus serratus Male v2 | Fucales | Fucaceae | Barrera-Redondo et al., 2025 Nature Ecology & Evolution | PRJNA1059008 | Illumina, PacBio, genetic-map-based pseudochromosomes | False | 145546 | 87148 | 3196437 | |
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Fucales | Fucaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 145546 | 87148 | 3196437 | |
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Sphacelariales | Stypocaulaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 496299 | 588760 | 8908390 | |
| Hapterophycus canaliculatus Female | Ectocarpales | Scytosiphonaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 496081 | 2567908 | 3198012 | |
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Ectocarpales | Scytosiphonaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 496081 | 2567908 | 3198012 | |
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Sphacelariales | Lithodermataceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | Not available | 246117 | 3199415 | |
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Raphidomonadales | Chattonellales | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 160585 | 2829 | 3194420 | |
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Fucales | Himanthaliaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 160585 | 74478 | 3197836 | |
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Desmarestiales | Desmarestiaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 325517 | 62318 | 3200000 | |
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Ectocarpales | Acinetosporaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145435 | 133510 | 5423288 | |
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Ectocarpales | Acinetosporaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145440 | 1630631 | 5423286 | |
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Laminariales | Laminariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 145724 | 80365 | 5422479 | |
| Laminaria digitata | Laminariales | Laminariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | False | 145724 | 80365 | 5422479 | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 162814 | 68331 | 3198612 | |
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Ectocarpales | Chordariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 371106 | 64929 | 4377126 | |
| Laminarionema elsbetiae | Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | False | 371106 | 64929 | 4377126 | |
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Laminariales | Laminariaceae | Diesel et al., 2023 BMC Genomics | PRJNA926673 | Undetermined | True | 232231 | 35122 | 5422328 | |
| Macrocystis pyrifera | Laminariales | Laminariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | False | 232231 | 35122 | 5422328 | |
| Macrocystis pyrifera Male | Laminariales | Laminariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 232231 | 35122 | 5422328 | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 376211 | 190704 | 3198325 | |
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Syringodermatales | Syringodermataceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 373369 | 217211 | 3198147 | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 373653 | Not available | Not available | |
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Ectocarpales | Chordariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 145331 | 64930 | 3198352 | |
| Myriotrichia clavaeformis Male | Ectocarpales | Chordariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 145331 | 64930 | 3198352 | |
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Laminariales | Arthrothamnaceae | Alves-Lima et al., 2025 The Journal of Heredity | Not available | PacBio | True | 240752 | 117523 | 4267628 | |
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Dictyotales | Dictyotaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145382 | 381692 | 3200195 | |
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Fucales | Fucaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 145550 | 74467 | 3196499 | |
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Ectocarpales | Scytosiphonaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | Not available | Not available | Not available | |
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Phaeosacciales | Phaeosacciaceae | Mc Cartney et al., 2024 npj Biodiversity | PRJEB78549 | Illumina, Nanopore, Hi-C | True | 601211 | 2797544 | Not available | |
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Phaeothamniales | Phaeothamniaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | Not available | 77034 | Not available | |
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Ectocarpales | Ectocarpaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 145458 | 246121 | 3198767 | |
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Fucales | Sargassaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 624315 | 590108 | 8159857 | |
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Ectocarpales | Chordariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 146282 | 246123 | 3199672 | |
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Ectocarpales | Acinetosporaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 146282 | 2885 | 3199757 | |
| Pylaiella littoralis | Ectocarpales | Acinetosporaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | False | 146282 | 2885 | 3199757 | |
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Laminariales | Arthrothamnaceae | Ye et la 2015 Nature Communication | JXRI00000000 | Illumina MatePE, PacBio | True | 377084 | 88149 | 4377197 | |
| Saccharina latissima Female | Laminariales | Arthrothamnaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, PacBio | False | 234483 | 309358 | 4377207 | |
| Saccharina latissima | Laminariales | Arthrothamnaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | False | 234483 | 309358 | 4377207 | |
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Laminariales | Arthrothamnaceae | Denoeud et al., 2024 Cell | Not available | Illumina, PacBio, genetic-map-based pseudochromosomes | True | 234483 | 309358 | 4377207 | |
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Tilopteridales | Phyllariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 145734 | 66620 | 8703880 | |
| Saccorhiza polyschides Female | Tilopteridales | Phyllariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 145735 | 45365 | 5422611 | |
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Tilopteridales | Phyllariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 145735 | 45365 | 5422611 | |
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Fucales | Sargassaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 494844 | Not available | Not available | |
| Sargassum fusiforme | Fucales | Sargassaceae | Wang et al., 2020 Frontiers in Genetics | Not available | Illumina PE, PacBio | False | 494972 | 590727 | 3196917 | |
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Fucales | Sargassaceae | Kim et al., 2025 Genome Biology and Evolution | PRJNA1184803 | Undetermined | True | 494972 | 590727 | 3196917 | |
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Fucales | Sargassaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | Not available | Not available | Not available | |
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Fucales | Sargassaceae | Kim et al., 2025 Genome Biology and Evolution | PRJNA1185288 | Undetermined | True | 240752 | 127542 | 3196939 | |
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Schizocladiales | Schizocladiaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 395992 | 196139 | Not available | |
| Scytosiphon promiscuus Male v2 | Ectocarpales | Scytosiphonaceae | Barrera-Redondo et al., 2025 Nature Ecology & Evolution | PRJNA1059008 | Illumina, Nanopore, Hi-C | False | 1356524 | 1403536 | 12172656 | |
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Ectocarpales | Scytosiphonaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina, Nanopore | True | 1356524 | 1403536 | 12172656 | |
| Scytosiphon promiscuus Female | Ectocarpales | Scytosiphonaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 1356524 | 1403536 | 12172656 | |
| Scytosiphon promiscuus | Ectocarpales | Scytosiphonaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | False | 1356524 | 1403536 | 12172656 | |
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Scytothamnales | Splachnidiaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 325567 | 64934 | 3200842 | |
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Sphacelariales | Sphacelariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 372371 | 117517 | 3200668 | |
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Sphacelariales | Sphacelariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 145902 | 117516 | 3200710 | |
| Sphacelaria rigidula | Sphacelariales | Sphacelariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | False | 145902 | 117516 | 3200710 | |
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Sphacelariales | Sphacelariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | Not available | Not available | Not available | |
| Sphaerotrichia firma Male | Ectocarpales | Chordariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | False | 374066 | 2841634 | 3199115 | |
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Ectocarpales | Chordariaceae | Denoeud et al., 2024 Cell | PRJEB76691 | Illumina | True | 374066 | 2841634 | 3199115 | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145354 | 86908 | 3199197 | |
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Ectocarpales | Chordariaceae | Nelson et al., 2024 Molecular Plant | PRJNA924561 | Illumina | True | 145355 | 1240997 | 3199185 | |
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Tribonematales | Tribonemataceae | Mahan et al., 2021 Microbiology Resource Announcements | PRJNA692219 | PacBio + illumina | True | 610084 | 303371 | 3200882 | |
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Laminariales | Alariaceae | Graf et al 2021 Nature Ecology & Evolution | PRJNA646283 | Illumina, PacBio, genetic-map-based pseudochromosomes | True | 145721 | 74381 | 5422556 |