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Best Assembly Ectocarpus crouaniorum (Male)

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Ectocarpus
  • Species: crouaniorum
  • Strain: Ec862m (EcPH12-21m)
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore, Hi-C
  • Size: 218.48 Mbp
  • Number of contigs: 175
  • GC content: 53.2%
  • N content: 0%
  • N50: 7.6 Mbp
  • L50: 12

Annotation

  • Protein-coding genes: 17770
  • Gene length (average): 7713.95
  • Gene length (median): 5909.0
  • CDS length (average): 1612.67
  • CDS length (median): 1179.0
  • CDS proportion (genome): 13.1%
  • Genes without introns: 2327
  • Number of contigs with at least one gene (genome): 68.0%
  • Number of contigs with at least one gene (bases): 98.8%

BUSCO results (BUSCO v3 with eukaryota_odb9 set)

Genome

  • Single-copy genes: 196
  • Duplicated genes: 3
  • Fragmented genes: 33
  • Missing genes: 23

Proteins

  • Single-copy genes: 225
  • Duplicated genes: 2
  • Fragmented genes: 12
  • Missing genes: 16

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >