You are viewing Ectocarpus siliculosus Ec863f (EcPH12-90f) Female , to access additional genome assemblies for this species, click here

Note that the reference genome strain (originally Ectocarpus siliculosus) is now called Ectocarpus species7

Ectocarpus siliculosus (Female)

Draft genome

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Ectocarpus
  • Species: siliculosus
  • Strain: Ec863f (EcPH12-90f)
  • Sex: Female
  • Ploidy: Haploid
  • Common name: ori
© D. Scornet CNRS

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina
  • Size: 186.48 Mbp
  • Number of contigs: 22843
  • GC content: 53.7%
  • N content: 0%
  • N50: 26.01 Kbp
  • L50: 2020

Annotation

  • Protein-coding genes: 18119
  • Gene length (average): 5193.22
  • Gene length (median): 4019.0
  • CDS length (average): 1353.22
  • CDS length (median): 936.0
  • CDS proportion (genome): 12.8%
  • Genes without introns: 3720
  • Number of contigs with at least one gene (genome): 29.3%
  • Number of contigs with at least one gene (bases): 78.2%

BUSCO results (BUSCO v3 with eukaryota_odb9 set)

Genome

  • Single-copy genes: 160
  • Duplicated genes: 1
  • Fragmented genes: 54
  • Missing genes: 40

Proteins

  • Single-copy genes: 169
  • Duplicated genes: 0
  • Fragmented genes: 43
  • Missing genes: 43

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >