Ectocarpus subulatus
Description
- Genus: Ectocarpus
- Species: subulatus
- Strain: Bft15b
- Sex: Unknown
- Ploidy: Unknown
- Common name: No common name known
Resources
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Download Ectocarpus subulatus archive (Not yet available)
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
- Other collection ↵
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina MatePE, Hi-C
- Size: 252.85 Mbp
- Number of contigs: 1327
- GC content: 53.6%
- N content: 0.31%
- N50: 7.35 Mbp
- L50: 14
Annotation
- Protein-coding genes: 18194
- Gene length (average): 7350.01
- Gene length (median): 5788.0
- CDS length (average): 1651.49
- CDS length (median): 1216.0
- CDS proportion (genome): 11.67%
- Genes without introns: 402
- Number of contigs with at least one gene (genome): 29.39%
- Number of contigs with at least one gene (bases): 97.73%
BUSCO results (BUSCO v3 with eukaryota_odb9 set)
Genome
- Single-copy genes: 170
- Duplicated genes: 24
- Fragmented genes: 31
- Missing genes: 30
Proteins
- Single-copy genes: 187
- Duplicated genes: 27
- Fragmented genes: 15
- Missing genes: 26
Additional genome assemblies for this species
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Ectocarpus subulatus Bft15b Male (public)
Sequencing: Illumina MatePE, Hi-C