Macrocystis pyrifera
(Female)
Near chromosome scale assembly
Description
- Genus: Macrocystis
- Species: pyrifera
- Strain: CI_03
- Sex: Female
- Ploidy: Haploid
- Common name: Giant kelp
Resources
-
Download Macrocystis pyrifera archive (Not yet available)
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
- Publications:
World occurrences (from GBIF)
Assembly
- Sequencing: Not communicated
- Size: 537.45 Mbp
- Number of contigs: 223
- GC content: 50.3%
- N content: 0%
- N50: 13.67 Mbp
- L50: 16
Annotation
- Protein-coding genes: 25919
- Gene length (average): 8703.31
- Gene length (median): 5764.0
- CDS length (average): 1114.63
- CDS length (median): 805.0
- CDS proportion (genome): 5.37%
- Genes without introns: 3716
- Number of contigs with at least one gene (genome): 84.3%
- Number of contigs with at least one gene (bases): 99.3%
BUSCO results (BUSCO v3 with eukaryota_odb9 set)
Genome
- Single-copy genes: 190
- Duplicated genes: 2
- Fragmented genes: 33
- Missing genes: 30
Proteins
- Single-copy genes: 208
- Duplicated genes: 1
- Fragmented genes: 24
- Missing genes: 22