Pleurocladia lacustris
Good quality assembly
Description
- Genus: Pleurocladia
- Species: lacustris
- Strain: SAG 25.93
- Sex: Unknown
- Ploidy: Haploid
- Common name: No common name known
Resources
World occurrences (from GBIF)
Assembly
- Sequencing: Illumina, Nanopore
- Size: 220.44 Mbp
- Number of contigs: 2680
- GC content: 52.1%
- N content: 0%
- N50: 118.92 Kbp
- L50: 555
Annotation
- Protein-coding genes: 16268
- Gene length (average): 8091.05
- Gene length (median): 5995.0
- CDS length (average): 1139.9
- CDS length (median): 885.0
- CDS proportion (genome): 5.6%
- Genes without introns: 2726
- Number of contigs with at least one gene (genome): 76.1%
- Number of contigs with at least one gene (bases): 64.7%
BUSCO results (BUSCO v5 with eukaryota_odb10)
Genome
- Single-copy genes: 193
- Duplicated genes: 0
- Fragmented genes: 30
- Missing genes: 32
Proteins
- Single-copy genes: 159
- Duplicated genes: 0
- Fragmented genes: 53
- Missing genes: 43