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Best Assembly Pylaiella littoralis

Good quality assembly

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Pylaiella
  • Species: littoralis
  • Strain: U1.48
  • Sex: Unknown
  • Ploidy: Haploid
  • Common name: Mung
© D. Scornet CNRS

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 322.46 Mbp
  • Number of contigs: 1708
  • GC content: 51.4%
  • N content: 0%
  • N50: 352.95 Kbp
  • L50: 274

Annotation

  • Protein-coding genes: 22501
  • Gene length (average): 8153.52
  • Gene length (median): 4525.0
  • CDS length (average): 1309.47
  • CDS length (median): 798.0
  • CDS proportion (genome): 9.1%
  • Genes without introns: 5559
  • Number of contigs with at least one gene (genome): 89.1%
  • Number of contigs with at least one gene (bases): 99.2%

BUSCO results (BUSCO v3 with eukaryota_odb9 set)

Genome

  • Single-copy genes: 199
  • Duplicated genes: 3
  • Fragmented genes: 19
  • Missing genes: 34

Proteins

  • Single-copy genes: 220
  • Duplicated genes: 2
  • Fragmented genes: 10
  • Missing genes: 23

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >