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Saccharina latissima (Female)

Good quality assembly

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Saccharina
  • Species: latissima
  • Strain: SLPER63f
  • Sex: Female
  • Ploidy: Haploid
  • Common name: Sugar kelp

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, PacBio
  • Size: 531.27 Mbp
  • Number of contigs: 4592
  • GC content: 49.7%
  • N content: 0%
  • N50: 247.17 Kbp
  • L50: 632

Annotation

  • Protein-coding genes: 17672
  • Gene length (average): 10887.64
  • Gene length (median): 6706.0
  • CDS length (average): 1171.78
  • CDS length (median): 777.0
  • CDS proportion (genome): 3.9%
  • Genes without introns: 3412
  • Number of contigs with at least one gene (genome): 59.6%
  • Number of contigs with at least one gene (bases): 88.7%

BUSCO results (BUSCO v3 with eukaryota_odb9 set)

Genome

  • Single-copy genes: 179
  • Duplicated genes: 1
  • Fragmented genes: 35
  • Missing genes: 40

Proteins

  • Single-copy genes: 182
  • Duplicated genes: 2
  • Fragmented genes: 32
  • Missing genes: 39

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >