Sargassum thunbergii
Good quality assembly
Description
- Genus: Sargassum
- Species: thunbergii
- Strain: Unknown strain
- Sex: Unknown
- Ploidy: Diploid
- Common name: No common name known
Resources
- Genome browser (Not yet available)
- GGA: Galaxy Genome Annotation (Not yet available)
- AlgaeBase ↵
- WORMS ↵
- NCBI ↵
- Roscoff Culture Collection (Not yet available)
- Publications:
World occurrences (from GBIF)
Assembly
- Sequencing: Not communicated
- Size: 376.25 Mbp
- Number of contigs: 2347
- GC content: 48.6%
- N content: 0%
- N50: 244.66 Kbp
- L50: 465
Annotation
- Protein-coding genes: 19210
- Gene length (average): 6332.29
- Gene length (median): 4467.0
- CDS length (average): 706.71
- CDS length (median): 161.0
- CDS proportion (genome): 3.6%
- Genes without introns: 2076
- Number of contigs with at least one gene (genome): 92.5%
- Number of contigs with at least one gene (bases): 97.68%
BUSCO results (BUSCO v3 with eukaryota_odb9 set)
Genome
- Single-copy genes: 192
- Duplicated genes: 6
- Fragmented genes: 17
- Missing genes: 40
Proteins
- Single-copy genes: 209
- Duplicated genes: 9
- Fragmented genes: 12
- Missing genes: 25