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Best Assembly Scytosiphon promiscuus (Male)

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Scytosiphon
  • Species: promiscuus
  • Strain: 110409 Ot110409-Otamoi-16-male
  • Sex: Male
  • Ploidy: Haploid
  • Common name: No common name known

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore, Hi-C
  • Size: 193.36 Mbp
  • Number of contigs: 451
  • GC content: 5468%
  • N content: 0%
  • N50: 6.78 Mbp
  • L50: 12

Annotation

  • Protein-coding genes: 19218
  • Gene length (average): 7192.67
  • Gene length (median): 5461.0
  • CDS length (average): 1536.8
  • CDS length (median): 1101.0
  • CDS proportion (genome): 11.3%
  • Genes without introns: 3126
  • Number of contigs with at least one gene (genome): 100.0%
  • Number of contigs with at least one gene (bases): 100.0%

BUSCO results (BUSCO v3 with eukaryota_odb9 set)

Genome

  • Single-copy genes: 201
  • Duplicated genes: 1
  • Fragmented genes: 28
  • Missing genes: 25

Proteins

  • Single-copy genes: 224
  • Duplicated genes: 1
  • Fragmented genes: 12
  • Missing genes: 18

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >