You are viewing Desmarestia herbacea DmunF Female , to access additional genome assemblies for this species, click here

Desmarestia herbacea (Female)

Good quality assembly

AlgaeBase

Worms

GGA

GGA

ncbi

Description


  • Genus: Desmarestia
  • Species: herbacea
  • Strain: DmunF
  • Sex: Female
  • Ploidy: Haploid
  • Common name: No common name known

Resources

World occurrences (from GBIF)

Assembly

  • Sequencing: Illumina, Nanopore
  • Size: 484.71 Mbp
  • Number of contigs: 2593
  • GC content: 48.4%
  • N content: 0%
  • N50: 559.79 Kbp
  • L50: 249

Annotation

  • Protein-coding genes: 16759
  • Gene length (average): 11160.41
  • Gene length (median): 7255.0
  • CDS length (average): 1257.4
  • CDS length (median): 879.0
  • CDS proportion (genome): 4.3%
  • Genes without introns: 3057
  • Number of contigs with at least one gene (genome): 49.4%
  • Number of contigs with at least one gene (bases): 87.6%

BUSCO results (BUSCO v3 with eukaryota_odb9 set)

Genome

  • Single-copy genes: 201
  • Duplicated genes: 5
  • Fragmented genes: 23
  • Missing genes: 26

Proteins

  • Single-copy genes: 210
  • Duplicated genes: 2
  • Fragmented genes: 24
  • Missing genes: 19

Additional genome assemblies for this species

< !-- World occurences map, based on example found at https://tile.gbif.org/ui/4326/leaflet.html -- >