The Phaeoexplorer brown algal genome database

A comprehensive database of genome assemblies for brown algae (Phaeophyceae) and closely related stramenopile taxa.

Taxonomy-based search and genome database statistics

Taxonomy

Statistics

Genome assembly quality

Resources available for genomes

Featured Genomes

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Brown algal genome data

Note that the resources available for each genome vary, depending on the quality of the genome assembly.

Genome quality scale: = Near chromosome scale assembly | ☆ = Good quality assembly | ☆☆ = Draft genome | ☆☆☆ = No quality assessment
                                                                                                                                                                                                                                                                       
Species Order Family Project genome_quality Sequencing method Best assembly for the species WoRMS link GoaT link GBIF taxonKey
Agarum clathratum   Laminariales Agaraceae Undetermined ☆ ☆ ☆ Illumina False 157207 105404 2661536
Alaria esculenta   Laminariales Alariaceae Undetermined ☆ ☆ ☆ Undetermined False 145716 2889 5422592
Alaria marginata   GCA_037833945.1 Laminariales Alariaceae Undetermined ☆ ☆ ☆ Illumina False 371791 98221 5422588
Alethocladus corymbosus   Sphacelariales Stypocaulaceae Undetermined ☆ ☆ ☆ Illumina False Not available 116063 3200777
Best Assembly Best genome assembly for the species
Ascophyllum nodosum   Male
Fucales Fucaceae Phaeoexplorer Illumina, Nanopore True 145541 52969 3196524
Ascoseira mirabilis   Ascoseirales Ascoseiraceae Undetermined ☆ ☆ ☆ Illumina False 325432 76830 Not available
Bodanella lauterbornii   Sphacelariales Lithodermataceae Undetermined ☆ ☆ ☆ Illumina False Not available 246119 Not available
Botrytella micromora   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 145484 86904 3198845
Botrytella uvaeformis   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 500194 Not available 3198851
Canistrocarpus cervicornis   Dictyotales Dictyotaceae Undetermined ☆ ☆ ☆ Illumina False 377141 499615 4377177
Carpomitra costata   Sporochnales Sporochnaceae Undetermined ☆ ☆ ☆ Illumina False 145910 66794 3196229
Chlorellidium tetrabotrys   GCA_032273165.1 Mischococcales Botryochloridaceae Undetermined ☆ ☆ ☆ Illumina False Not available 243652 12256081
Best Assembly Best genome assembly for the species
Chordaria linearis   Monoicous
Ectocarpales Chordariaceae SexSea Illumina, Nanopore True 325486 64904 Not available
Best Assembly Best genome assembly for the species
Choristocarpus tenellus  
Discosporangiales Choristocarpaceae Phaeoexplorer Illumina, Nanopore True 145887 116065 3198071
Best Assembly Best genome assembly for the species
Chrysoparadoxa australica  
Chrysoparadoxales Chrysoparadoxaceae Undetermined Illumina True 1359032 2498842 10092953
Cladosiphon okamuranus   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina MatePE False 371901 309737 3198562
Costaria costata   GCA_036873775.2 Laminariales Agaraceae Undetermined ☆ ☆ ☆ Illumina False 371985 2872 8130639
Cymathaere triplicata   GCA_035584555.1 Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 373978 309354 4377188
Desmarestia aculeata   Desmarestiales Desmarestiaceae Undetermined ☆ ☆ ☆ Illumina False 145307 62298 5423373
Desmarestia anceps   Desmarestiales Desmarestiaceae Undetermined ☆ ☆ ☆ Illumina False 325496 62299 Not available
Best Assembly Best genome assembly for the species
Desmarestia dudresnayi   Monoicous
Desmarestiales Desmarestiaceae Undetermined ☆ ☆ ☆ Undetermined True 295864 99931 5730473
Best Assembly Best genome assembly for the species
Desmarestia dudresnayi   Monoicous
Desmarestiales Desmarestiaceae Phaeoexplorer, SexSea Illumina True 295864 99931 5730473
Desmarestia herbacea   Female Desmarestiales Desmarestiaceae Phaeoexplorer, SexSea Illumina, Nanopore False 239201 1205903 5423326
Best Assembly Best genome assembly for the species
Desmarestia herbacea   Male
Desmarestiales Desmarestiaceae Undetermined ☆ ☆ ☆ Undetermined True 239201 1205903 5423326
Best Assembly Best genome assembly for the species
Desmarestia herbacea   Male
Desmarestiales Desmarestiaceae Phaeoexplorer, SexSea Illumina, Nanopore True 239201 1205903 5423326
Best Assembly Best genome assembly for the species
Dictyota dichotoma   Male
Dictyotales Dictyotaceae Undetermined ☆ ☆ ☆ Illumina, Nanopore, Hi-C True 145367 2876 5423480
Best Assembly Best genome assembly for the species
Dictyota dichotoma   Male
Dictyotales Dictyotaceae Undetermined Illumina, Nanopore True 145367 2876 5423480
Dictyota falklandica   Dictyotales Dictyotaceae Undetermined ☆ ☆ ☆ Illumina False 1804479 2607331 Not available
Best Assembly Best genome assembly for the species
Discosporangium mesarthrocarpum  
Discosporangiales Discosporangiaceae Phaeoexplorer Illumina True 145886 376270 3198076
Ectocarpoides piscinalis   Undetermined ☆ ☆ ☆ Illumina False Not available 2873786 Not available
Best Assembly Best genome assembly for the species
Ectocarpus crouaniorum   Male
Ectocarpales Ectocarpaceae Undetermined ☆ ☆ ☆ Illumina, Nanopore, Hi-C True 496828 690460 3199545
Ectocarpus crouaniorum   Female Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False 496828 690460 3199545
Best Assembly Best genome assembly for the species
Ectocarpus crouaniorum   Male
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina, Nanopore True 496828 690460 3199545
Ectocarpus fasciculatus   Female Ectocarpales Ectocarpaceae Phaeoexplorer, SexSea Illumina False 145404 43935 3199608
Ectocarpus fasciculatus   Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False Not available 43935 3199608
Ectocarpus fasciculatus   Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False Not available 43935 3199608
Best Assembly Best genome assembly for the species
Ectocarpus fasciculatus   Male
Ectocarpales Ectocarpaceae Phaeoexplorer, SexSea Illumina, Nanopore True 145404 43935 3199608
Best Assembly Best genome assembly for the species
Ectocarpus siliculosus   Male
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina, Nanopore True 145410 2880 3199521
Ectocarpus siliculosus   Female Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False 145410 2880 3199521
Ectocarpus sp.   Ectocarpales Ectocarpaceae Undetermined ☆ ☆ ☆ Illumina False Not available Not available Not available
Ectocarpus species1   Female Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False Not available 1535357 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species1   Male
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1535357 Not available
Ectocarpus species1   Male Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False Not available 1535360 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species12  
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1535356 Not available
Ectocarpus species12   Female Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False Not available 1535356 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species13  
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1904779 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species2   Male
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1535358 Not available
Ectocarpus species3   Male Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False Not available 1535359 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species3   Female
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1535359 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species5   Female
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1535361 Not available
Ectocarpus species5   Male Ectocarpales Ectocarpaceae Phaeoexplorer Illumina False Not available 1535361 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species6  
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina, Nanopore True Not available 1535362 Not available
Ectocarpus species7   Male_plus_femaleSDR Ectocarpales Ectocarpaceae Undetermined Sanger False Not available 74372 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species8  
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1535364 Not available
Best Assembly Best genome assembly for the species
Ectocarpus species9   Female
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina True Not available 1535365 Not available
Best Assembly Best genome assembly for the species
Ectocarpus subulatus  
Ectocarpales Ectocarpaceae Undetermined ☆ ☆ ☆ Illumina MatePE, Hi-C True 502074 1535423 3199537
Ectocarpus subulatus   Male Ectocarpales Ectocarpaceae Undetermined Illumina MatePE False 502074 1535423 3199537
Egregia menziesii   GCA_035584435.1 Laminariales Lessoniaceae Undetermined ☆ ☆ ☆ Illumina False 372502 105409 3196088
Elachista antarctica   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 325500 190703 Not available
Best Assembly Best genome assembly for the species
Feldmannia mitchelliae   Monoicous
Ectocarpales Acinetosporaceae Phaeoexplorer Illumina True 699648 1964287 7907318
Best Assembly Best genome assembly for the species
Fucus distichus   Monoicous
Fucales Fucaceae Undetermined Illumina True 145544 3012 3196454
Best Assembly Best genome assembly for the species
Fucus serratus   Male
Fucales Fucaceae Undetermined Illumina, PacBio, genetic-map-based pseudochromosomes True 145546 87148 3196437
Best Assembly Best genome assembly for the species
Fucus serratus   Male
Fucales Fucaceae Phaeoexplorer Illumina, Nanopore True 145546 87148 3196437
Best Assembly Best genome assembly for the species
Halopteris paniculata   Monoicous
Sphacelariales Stypocaulaceae SexSea Illumina True 496299 588760 8908390
Best Assembly Best genome assembly for the species
Hapterophycus canaliculatus   Male
Ectocarpales Scytosiphonaceae Phaeoexplorer Illumina True 496081 2567908 3198012
Hapterophycus canaliculatus   Female Ectocarpales Scytosiphonaceae Phaeoexplorer Illumina False 496081 2567908 3198012
Best Assembly Best genome assembly for the species
Heribaudiella fluviatilis  
Sphacelariales Lithodermataceae Phaeoexplorer Illumina True Not available 246117 3199415
Best Assembly Best genome assembly for the species
Heterosigma akashiwo  
Raphidomonadales Chattonellales Undetermined Illumina, Nanopore True 160585 2829 3194420
Best Assembly Best genome assembly for the species
Himanthalia elongata   Dioecious
Fucales Himanthaliaceae Phaeoexplorer Illumina True 160585 74478 3197836
Himantothallus grandifolius   Desmarestiales Desmarestiaceae Undetermined ☆ ☆ ☆ Illumina False 325517 62318 3200000
Hincksia hincksiae   Ectocarpales Acinetosporaceae Undetermined ☆ ☆ ☆ Illumina False 145435 133510 5423288
Hincksia sandriana   Ectocarpales Acinetosporaceae Undetermined ☆ ☆ ☆ Illumina False 145440 1630631 5423286
Internoretia fryeana   GCA_036784875.1 Ectocarpales Acinetosporaceae Undetermined ☆ ☆ ☆ Illumina False 494836 2992841 2639707
Best Assembly Best genome assembly for the species
Laminaria digitata   Male
Laminariales Laminariaceae Phaeoexplorer Illumina, Nanopore True 145724 80365 5422479
Laminaria digitata   Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 145724 80365 5422479
Laminaria ephemera   GCA_036873875.1 Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 372506 309364 5422472
Laminaria setchellii   GCA_037834435.1 Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 240748 169769 5422451
Laminaria sinclairii   GCA_036873665.1 Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 372507 169770 7812368
Laminariocolax aecidioides   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 162814 68331 3198612
Laminarionema elsbetiae   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 371106 64929 4377126
Best Assembly Best genome assembly for the species
Laminarionema elsbetiae  
Ectocarpales Chordariaceae Phaeoexplorer Illumina True 371106 64929 4377126
Best Assembly Best genome assembly for the species
Macrocystis pyrifera   Female
Laminariales Laminariaceae Undetermined Undetermined True 232231 35122 5422328
Macrocystis pyrifera   Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 232231 35122 5422328
Macrocystis pyrifera   Male Laminariales Laminariaceae Phaeoexplorer, SexSea Illumina False 232231 35122 5422328
Microspongium alariae   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 376211 190704 3198325
Microzonia velutina   Syringodermatales Syringodermataceae Undetermined ☆ ☆ ☆ Illumina False 373369 217211 3198147
Myriogloea chilensis   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 373653 Not available Not available
Myriotrichia clavaeformis   Male Ectocarpales Chordariaceae Phaeoexplorer, SexSea Illumina False 145331 64930 3198352
Best Assembly Best genome assembly for the species
Myriotrichia clavaeformis   Female
Ectocarpales Chordariaceae Phaeoexplorer, SexSea Illumina True 145331 64930 3198352
Neoagarum fimbriatum   GCA_036873965.1 Laminariales Agaraceae Undetermined ☆ ☆ ☆ Illumina False 1313053 572309 9926758
Nereocystis luetkeana   Laminariales Laminariaceae Undetermined PacBio False 240752 117523 4267628
Padina boergesenii   Dictyotales Dictyotaceae Undetermined ☆ ☆ ☆ Illumina False 145382 381692 3200195
Best Assembly Best genome assembly for the species
Pelvetia canaliculata   Dioecious
Fucales Fucaceae Phaeoexplorer Illumina True 145550 74467 3196499
Petalonia sp.   Ectocarpales Scytosiphonaceae Undetermined ☆ ☆ ☆ Illumina False Not available Not available Not available
Best Assembly Best genome assembly for the species
Phaeosaccion multiseriatum  
Phaeosacciales Phaeosacciaceae Undetermined Illumina, Nanopore, Hi-C True 601211 2797544 Not available
Best Assembly Best genome assembly for the species
Phaeothamnion wetherbeei  
Phaeothamniales Phaeothamniaceae Phaeoexplorer Illumina, Nanopore True Not available 77034 Not available
Best Assembly Best genome assembly for the species
Pleurocladia lacustris  
Ectocarpales Ectocarpaceae Phaeoexplorer Illumina, Nanopore True 145458 246121 3198767
Polycladia myrica   Fucales Sargassaceae Undetermined ☆ ☆ ☆ Illumina False 624315 590108 8159857
Best Assembly Best genome assembly for the species
Porterinema fluviatile  
Ectocarpales Chordariaceae Phaeoexplorer Illumina, Nanopore True 146282 246123 3199672
Pterygophora californica   GCA_032273145.1 Laminariales Alariaceae Undetermined ☆ ☆ ☆ Illumina False 240750 169782 3196092
Pylaiella littoralis   Ectocarpales Acinetosporaceae Undetermined ☆ ☆ ☆ Illumina False 146282 2885 3199757
Best Assembly Best genome assembly for the species
Pylaiella littoralis  
Ectocarpales Acinetosporaceae Phaeoexplorer Illumina, Nanopore True 146282 2885 3199757
Saccharina japonica   Laminariales Laminariaceae Undetermined Illumina MatePE, PacBio False 377084 88149 4377197
Saccharina latissima   Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 234483 309358 4377207
Best Assembly Best genome assembly for the species
Saccharina latissima   Female v2
Laminariales Laminariaceae Phaeoexplorer Illumina, PacBio, genetic-map-based pseudochromosomes True 234483 309358 4377207
Saccharina latissima   Female Laminariales Laminariaceae Phaeoexplorer, SexSea Illumina, PacBio False 234483 309358 4377207
Saccharina sessilis   GCA_032270885.1 Laminariales Laminariaceae Undetermined ☆ ☆ ☆ Illumina False 376879 416828 Not available
Best Assembly Best genome assembly for the species
Saccorhiza dermatodea   Monoicous
Tilopteridales Phyllariaceae Phaeoexplorer, SexSea Illumina True 145734 66620 8703880
Saccorhiza polyschides   Female Tilopteridales Phyllariaceae Phaeoexplorer, SexSea Illumina False 145735 45365 5422611
Best Assembly Best genome assembly for the species
Saccorhiza polyschides   Male
Tilopteridales Phyllariaceae Phaeoexplorer, SexSea Illumina True 145735 45365 5422611
Sargassum angustifolium   Fucales Sargassaceae Undetermined ☆ ☆ ☆ Illumina False 494844 Not available Not available
Sargassum fusiforme   Fucales Sargassaceae Undetermined ☆ ☆ ☆ Illumina PE, PacBio False 494972 590727 3196917
Best Assembly Best genome assembly for the species
Sargassum fusiforme  
Fucales Sargassaceae Undetermined Undetermined True 494972 590727 3196917
Sargassum latifolium   Fucales Sargassaceae Undetermined ☆ ☆ ☆ Illumina False Not available Not available Not available
Sargassum thunbergii   Fucales Sargassaceae Undetermined Undetermined False 240752 127542 3196939
Best Assembly Best genome assembly for the species
Schizocladia ischiensis  
Schizocladiales Schizocladiaceae Phaeoexplorer Illumina, Nanopore True 395992 196139 Not available
Scytosiphon promiscuus   Female Ectocarpales Scytosiphonaceae Phaeoexplorer, SexSea Illumina False 1356524 1403536 12172656
Best Assembly Best genome assembly for the species
Scytosiphon promiscuus   Male
Ectocarpales Scytosiphonaceae Phaeoexplorer, SexSea Illumina, Nanopore True 1356524 1403536 12172656
Scytosiphon promiscuus   Ectocarpales Scytosiphonaceae Undetermined ☆ ☆ ☆ Illumina False 1356524 1403536 12172656
Best Assembly Best genome assembly for the species
Scytosiphon promiscuus   Male
Ectocarpales Scytosiphonaceae Undetermined ☆ ☆ ☆ Illumina, Nanopore, Hi-C True 1356524 1403536 12172656
Scytothamnus fasciculatus   Scytothamnales Splachnidiaceae Undetermined ☆ ☆ ☆ Illumina False 325567 64934 3200842
Sphacelaria divaricata   Sphacelariales Sphacelariaceae Undetermined ☆ ☆ ☆ Illumina False 372371 117517 3200668
Best Assembly Best genome assembly for the species
Sphacelaria rigidula   Female
Sphacelariales Sphacelariaceae Phaeoexplorer Illumina True 145902 117516 3200710
Sphacelaria rigidula   Sphacelariales Sphacelariaceae Undetermined ☆ ☆ ☆ Illumina False 145902 117516 3200710
Sphacelaria sp.   Sphacelariales Sphacelariaceae Undetermined ☆ ☆ ☆ Illumina False Not available Not available Not available
Sphaerotrichia firma   Male Ectocarpales Chordariaceae Phaeoexplorer, SexSea Illumina False 374066 2841634 3199115
Best Assembly Best genome assembly for the species
Sphaerotrichia firma   Female
Ectocarpales Chordariaceae Phaeoexplorer Illumina True 374066 2841634 3199115
Stictyosiphon soriferus   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 145354 86908 3199197
Stictyosiphon tortilis   Ectocarpales Chordariaceae Undetermined ☆ ☆ ☆ Illumina False 145355 1240997 3199185
Tribonema minus   Tribonematales Tribonemataceae Undetermined PacBio + illumina False 610084 303371 3200882
Undaria pinnatifida   Laminariales Alariaceae Undetermined Illumina, PacBio, genetic-map-based pseudochromosomes False 145721 74381 5422556
Vaucheria bursata   GCA_032358265.1 Vaucheriales Vaucheriaceae Undetermined ☆ ☆ ☆ Illumina False Not available 2977 5423845