The Phaeoexplorer brown algal genome database
A comprehensive database of genome assemblies for brown algae (Phaeophyceae) and closely related stramenopile taxa.
Taxonomy-based search and genome database statistics
Featured Genomes
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Brown algal genome data
Note that the resources available for each genome vary, depending on the quality of the genome assembly.
Genome quality scale:
= Near chromosome scale assembly
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☆ = Good quality assembly
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☆☆ = Draft genome
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☆☆☆ = No quality assessment
| Species | Order | Family | Project | genome_quality | Sequencing method | Best assembly for the species | WoRMS link | GoaT link | GBIF taxonKey |
|---|---|---|---|---|---|---|---|---|---|
| Agarum clathratum | Laminariales | Agaraceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 157207 | 105404 | 2661536 |
| Alaria esculenta | Laminariales | Alariaceae | Undetermined | ☆ ☆ ☆ | Undetermined | False | 145716 | 2889 | 5422592 |
| Alaria marginata GCA_037833945.1 | Laminariales | Alariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 371791 | 98221 | 5422588 |
| Alethocladus corymbosus | Sphacelariales | Stypocaulaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | 116063 | 3200777 |
|
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Fucales | Fucaceae | Phaeoexplorer | Illumina, Nanopore | True | 145541 | 52969 | 3196524 | |
| Ascoseira mirabilis | Ascoseirales | Ascoseiraceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 325432 | 76830 | Not available |
| Bodanella lauterbornii | Sphacelariales | Lithodermataceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | 246119 | Not available |
| Botrytella micromora | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145484 | 86904 | 3198845 |
| Botrytella uvaeformis | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 500194 | Not available | 3198851 |
| Canistrocarpus cervicornis | Dictyotales | Dictyotaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 377141 | 499615 | 4377177 |
| Carpomitra costata | Sporochnales | Sporochnaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145910 | 66794 | 3196229 |
| Chlorellidium tetrabotrys GCA_032273165.1 | Mischococcales | Botryochloridaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | 243652 | 12256081 |
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Ectocarpales | Chordariaceae | SexSea | Illumina, Nanopore | True | 325486 | 64904 | Not available | |
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Discosporangiales | Choristocarpaceae | Phaeoexplorer | Illumina, Nanopore | True | 145887 | 116065 | 3198071 | |
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Chrysoparadoxales | Chrysoparadoxaceae | Undetermined | Illumina | True | 1359032 | 2498842 | 10092953 | |
| Cladosiphon okamuranus | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina MatePE | False | 371901 | 309737 | 3198562 |
| Costaria costata GCA_036873775.2 | Laminariales | Agaraceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 371985 | 2872 | 8130639 |
| Cymathaere triplicata GCA_035584555.1 | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 373978 | 309354 | 4377188 |
| Desmarestia aculeata | Desmarestiales | Desmarestiaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145307 | 62298 | 5423373 |
| Desmarestia anceps | Desmarestiales | Desmarestiaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 325496 | 62299 | Not available |
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Desmarestiales | Desmarestiaceae | Undetermined | ☆ ☆ ☆ | Undetermined | True | 295864 | 99931 | 5730473 |
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Desmarestiales | Desmarestiaceae | Phaeoexplorer, SexSea | Illumina | True | 295864 | 99931 | 5730473 | |
| Desmarestia herbacea Female | Desmarestiales | Desmarestiaceae | Phaeoexplorer, SexSea | Illumina, Nanopore | False | 239201 | 1205903 | 5423326 | |
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Desmarestiales | Desmarestiaceae | Undetermined | ☆ ☆ ☆ | Undetermined | True | 239201 | 1205903 | 5423326 |
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Desmarestiales | Desmarestiaceae | Phaeoexplorer, SexSea | Illumina, Nanopore | True | 239201 | 1205903 | 5423326 | |
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Dictyotales | Dictyotaceae | Undetermined | ☆ ☆ ☆ | Illumina, Nanopore, Hi-C | True | 145367 | 2876 | 5423480 |
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Dictyotales | Dictyotaceae | Undetermined | Illumina, Nanopore | True | 145367 | 2876 | 5423480 | |
| Dictyota falklandica | Dictyotales | Dictyotaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 1804479 | 2607331 | Not available |
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Discosporangiales | Discosporangiaceae | Phaeoexplorer | Illumina | True | 145886 | 376270 | 3198076 | |
| Ectocarpoides piscinalis | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | 2873786 | Not available | ||
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Ectocarpales | Ectocarpaceae | Undetermined | ☆ ☆ ☆ | Illumina, Nanopore, Hi-C | True | 496828 | 690460 | 3199545 |
| Ectocarpus crouaniorum Female | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | 496828 | 690460 | 3199545 | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina, Nanopore | True | 496828 | 690460 | 3199545 | |
| Ectocarpus fasciculatus Female | Ectocarpales | Ectocarpaceae | Phaeoexplorer, SexSea | Illumina | False | 145404 | 43935 | 3199608 | |
| Ectocarpus fasciculatus | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | Not available | 43935 | 3199608 | |
| Ectocarpus fasciculatus | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | Not available | 43935 | 3199608 | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer, SexSea | Illumina, Nanopore | True | 145404 | 43935 | 3199608 | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina, Nanopore | True | 145410 | 2880 | 3199521 | |
| Ectocarpus siliculosus Female | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | 145410 | 2880 | 3199521 | |
| Ectocarpus sp. | Ectocarpales | Ectocarpaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | Not available | Not available |
| Ectocarpus species1 Female | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | Not available | 1535357 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1535357 | Not available | |
| Ectocarpus species1 Male | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | Not available | 1535360 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1535356 | Not available | |
| Ectocarpus species12 Female | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | Not available | 1535356 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1904779 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1535358 | Not available | |
| Ectocarpus species3 Male | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | Not available | 1535359 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1535359 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1535361 | Not available | |
| Ectocarpus species5 Male | Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | False | Not available | 1535361 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina, Nanopore | True | Not available | 1535362 | Not available | |
| Ectocarpus species7 Male_plus_femaleSDR | Ectocarpales | Ectocarpaceae | Undetermined | Sanger | False | Not available | 74372 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1535364 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina | True | Not available | 1535365 | Not available | |
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Ectocarpales | Ectocarpaceae | Undetermined | ☆ ☆ ☆ | Illumina MatePE, Hi-C | True | 502074 | 1535423 | 3199537 |
| Ectocarpus subulatus Male | Ectocarpales | Ectocarpaceae | Undetermined | Illumina MatePE | False | 502074 | 1535423 | 3199537 | |
| Egregia menziesii GCA_035584435.1 | Laminariales | Lessoniaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 372502 | 105409 | 3196088 |
| Elachista antarctica | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 325500 | 190703 | Not available |
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Ectocarpales | Acinetosporaceae | Phaeoexplorer | Illumina | True | 699648 | 1964287 | 7907318 | |
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Fucales | Fucaceae | Undetermined | Illumina | True | 145544 | 3012 | 3196454 | |
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Fucales | Fucaceae | Undetermined | Illumina, PacBio, genetic-map-based pseudochromosomes | True | 145546 | 87148 | 3196437 | |
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Fucales | Fucaceae | Phaeoexplorer | Illumina, Nanopore | True | 145546 | 87148 | 3196437 | |
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Sphacelariales | Stypocaulaceae | SexSea | Illumina | True | 496299 | 588760 | 8908390 | |
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Ectocarpales | Scytosiphonaceae | Phaeoexplorer | Illumina | True | 496081 | 2567908 | 3198012 | |
| Hapterophycus canaliculatus Female | Ectocarpales | Scytosiphonaceae | Phaeoexplorer | Illumina | False | 496081 | 2567908 | 3198012 | |
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Sphacelariales | Lithodermataceae | Phaeoexplorer | Illumina | True | Not available | 246117 | 3199415 | |
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Raphidomonadales | Chattonellales | Undetermined | Illumina, Nanopore | True | 160585 | 2829 | 3194420 | |
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Fucales | Himanthaliaceae | Phaeoexplorer | Illumina | True | 160585 | 74478 | 3197836 | |
| Himantothallus grandifolius | Desmarestiales | Desmarestiaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 325517 | 62318 | 3200000 |
| Hincksia hincksiae | Ectocarpales | Acinetosporaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145435 | 133510 | 5423288 |
| Hincksia sandriana | Ectocarpales | Acinetosporaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145440 | 1630631 | 5423286 |
| Internoretia fryeana GCA_036784875.1 | Ectocarpales | Acinetosporaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 494836 | 2992841 | 2639707 |
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Laminariales | Laminariaceae | Phaeoexplorer | Illumina, Nanopore | True | 145724 | 80365 | 5422479 | |
| Laminaria digitata | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145724 | 80365 | 5422479 |
| Laminaria ephemera GCA_036873875.1 | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 372506 | 309364 | 5422472 |
| Laminaria setchellii GCA_037834435.1 | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 240748 | 169769 | 5422451 |
| Laminaria sinclairii GCA_036873665.1 | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 372507 | 169770 | 7812368 |
| Laminariocolax aecidioides | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 162814 | 68331 | 3198612 |
| Laminarionema elsbetiae | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 371106 | 64929 | 4377126 |
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Ectocarpales | Chordariaceae | Phaeoexplorer | Illumina | True | 371106 | 64929 | 4377126 | |
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Laminariales | Laminariaceae | Undetermined | Undetermined | True | 232231 | 35122 | 5422328 | |
| Macrocystis pyrifera | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 232231 | 35122 | 5422328 |
| Macrocystis pyrifera Male | Laminariales | Laminariaceae | Phaeoexplorer, SexSea | Illumina | False | 232231 | 35122 | 5422328 | |
| Microspongium alariae | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 376211 | 190704 | 3198325 |
| Microzonia velutina | Syringodermatales | Syringodermataceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 373369 | 217211 | 3198147 |
| Myriogloea chilensis | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 373653 | Not available | Not available |
| Myriotrichia clavaeformis Male | Ectocarpales | Chordariaceae | Phaeoexplorer, SexSea | Illumina | False | 145331 | 64930 | 3198352 | |
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Ectocarpales | Chordariaceae | Phaeoexplorer, SexSea | Illumina | True | 145331 | 64930 | 3198352 | |
| Neoagarum fimbriatum GCA_036873965.1 | Laminariales | Agaraceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 1313053 | 572309 | 9926758 |
| Nereocystis luetkeana | Laminariales | Laminariaceae | Undetermined | PacBio | False | 240752 | 117523 | 4267628 | |
| Padina boergesenii | Dictyotales | Dictyotaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145382 | 381692 | 3200195 |
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Fucales | Fucaceae | Phaeoexplorer | Illumina | True | 145550 | 74467 | 3196499 | |
| Petalonia sp. | Ectocarpales | Scytosiphonaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | Not available | Not available |
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Phaeosacciales | Phaeosacciaceae | Undetermined | Illumina, Nanopore, Hi-C | True | 601211 | 2797544 | Not available | |
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Phaeothamniales | Phaeothamniaceae | Phaeoexplorer | Illumina, Nanopore | True | Not available | 77034 | Not available | |
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Ectocarpales | Ectocarpaceae | Phaeoexplorer | Illumina, Nanopore | True | 145458 | 246121 | 3198767 | |
| Polycladia myrica | Fucales | Sargassaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 624315 | 590108 | 8159857 |
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Ectocarpales | Chordariaceae | Phaeoexplorer | Illumina, Nanopore | True | 146282 | 246123 | 3199672 | |
| Pterygophora californica GCA_032273145.1 | Laminariales | Alariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 240750 | 169782 | 3196092 |
| Pylaiella littoralis | Ectocarpales | Acinetosporaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 146282 | 2885 | 3199757 |
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Ectocarpales | Acinetosporaceae | Phaeoexplorer | Illumina, Nanopore | True | 146282 | 2885 | 3199757 | |
| Saccharina japonica | Laminariales | Laminariaceae | Undetermined | Illumina MatePE, PacBio | False | 377084 | 88149 | 4377197 | |
| Saccharina latissima | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 234483 | 309358 | 4377207 |
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Laminariales | Laminariaceae | Phaeoexplorer | Illumina, PacBio, genetic-map-based pseudochromosomes | True | 234483 | 309358 | 4377207 | |
| Saccharina latissima Female | Laminariales | Laminariaceae | Phaeoexplorer, SexSea | Illumina, PacBio | False | 234483 | 309358 | 4377207 | |
| Saccharina sessilis GCA_032270885.1 | Laminariales | Laminariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 376879 | 416828 | Not available |
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Tilopteridales | Phyllariaceae | Phaeoexplorer, SexSea | Illumina | True | 145734 | 66620 | 8703880 | |
| Saccorhiza polyschides Female | Tilopteridales | Phyllariaceae | Phaeoexplorer, SexSea | Illumina | False | 145735 | 45365 | 5422611 | |
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Tilopteridales | Phyllariaceae | Phaeoexplorer, SexSea | Illumina | True | 145735 | 45365 | 5422611 | |
| Sargassum angustifolium | Fucales | Sargassaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 494844 | Not available | Not available |
| Sargassum fusiforme | Fucales | Sargassaceae | Undetermined | ☆ ☆ ☆ | Illumina PE, PacBio | False | 494972 | 590727 | 3196917 |
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Fucales | Sargassaceae | Undetermined | Undetermined | True | 494972 | 590727 | 3196917 | |
| Sargassum latifolium | Fucales | Sargassaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | Not available | Not available |
| Sargassum thunbergii | Fucales | Sargassaceae | Undetermined | Undetermined | False | 240752 | 127542 | 3196939 | |
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Schizocladiales | Schizocladiaceae | Phaeoexplorer | Illumina, Nanopore | True | 395992 | 196139 | Not available | |
| Scytosiphon promiscuus Female | Ectocarpales | Scytosiphonaceae | Phaeoexplorer, SexSea | Illumina | False | 1356524 | 1403536 | 12172656 | |
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Ectocarpales | Scytosiphonaceae | Phaeoexplorer, SexSea | Illumina, Nanopore | True | 1356524 | 1403536 | 12172656 | |
| Scytosiphon promiscuus | Ectocarpales | Scytosiphonaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 1356524 | 1403536 | 12172656 |
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Ectocarpales | Scytosiphonaceae | Undetermined | ☆ ☆ ☆ | Illumina, Nanopore, Hi-C | True | 1356524 | 1403536 | 12172656 |
| Scytothamnus fasciculatus | Scytothamnales | Splachnidiaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 325567 | 64934 | 3200842 |
| Sphacelaria divaricata | Sphacelariales | Sphacelariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 372371 | 117517 | 3200668 |
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Sphacelariales | Sphacelariaceae | Phaeoexplorer | Illumina | True | 145902 | 117516 | 3200710 | |
| Sphacelaria rigidula | Sphacelariales | Sphacelariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145902 | 117516 | 3200710 |
| Sphacelaria sp. | Sphacelariales | Sphacelariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | Not available | Not available |
| Sphaerotrichia firma Male | Ectocarpales | Chordariaceae | Phaeoexplorer, SexSea | Illumina | False | 374066 | 2841634 | 3199115 | |
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Ectocarpales | Chordariaceae | Phaeoexplorer | Illumina | True | 374066 | 2841634 | 3199115 | |
| Stictyosiphon soriferus | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145354 | 86908 | 3199197 |
| Stictyosiphon tortilis | Ectocarpales | Chordariaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | 145355 | 1240997 | 3199185 |
| Tribonema minus | Tribonematales | Tribonemataceae | Undetermined | PacBio + illumina | False | 610084 | 303371 | 3200882 | |
| Undaria pinnatifida | Laminariales | Alariaceae | Undetermined | Illumina, PacBio, genetic-map-based pseudochromosomes | False | 145721 | 74381 | 5422556 | |
| Vaucheria bursata GCA_032358265.1 | Vaucheriales | Vaucheriaceae | Undetermined | ☆ ☆ ☆ | Illumina | False | Not available | 2977 | 5423845 |